If you are picky and you would like to change the folder layout for your module, you can. This is achieved from within the ModuleConfig.cfc by adding a conventions structure that will explain to the ColdBox Module engine how to locate and configure your module.
// Module Conventions
conventions = {
handlersLocation = "handlers",
viewsLocation = "views",
layoutsLocation = "layouts",
modelsLocation = "models"
};